kendall

Kendall's distance measures the depth of the most recent common infector (MRCI) for each pair of nodes with respect to the source (patient 0).

Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.

Cyril Geismar

mixtree

A Statistical Framework for Comparing Sets of Trees

kendall function

<dl><dt>tree</dt>
<dd>A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.</dd></dl>

Arguments

Compute the Kendall distance matrix — kendall

<dl>

<dt>tree</dt>
<dd>A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.</dd>

</dl>

kendall: Compute the Kendall distance matrix

Description

Usage

Value

Arguments

References

See Also

Examples