patristic

The patristic distance is the number of generations separating any two nodes in a transmission tree.

Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.

Cyril Geismar

mixtree

A Statistical Framework for Comparing Sets of Trees

patristic function

<dl><dt>tree</dt>
<dd>A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.</dd></dl>

Arguments

Compute the Patristic distance matrix — patristic

<dl>

<dt>tree</dt>
<dd>A data frame representing a transmission tree, with the first column containing the infector IDs and the second the infectee IDs.</dd>

</dl>

patristic: Compute the Patristic distance matrix

Description

Usage

Value

Arguments

Examples