validate_sets

Checks that the provided input is a list of at least two valid sets of transmission trees.
Each set is expected to be a list containing at least one data frame, as verified by
<code>validate_set</code>.

internal

Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.

Cyril Geismar

mixtree

A Statistical Framework for Comparing Sets of Trees

validate_sets function

<dl><dt>sets</dt>
<dd>A list where each element represents a set of transmission trees. Each set must be a list
containing one or more data frames.</dd></dl>

Arguments

Validate sets of transmission trees — validate_sets

<dl>

<dt>sets</dt>
<dd>A list where each element represents a set of transmission trees. Each set must be a list
containing one or more data frames.</dd>

</dl>

validate_sets: Validate sets of transmission trees

Description

Usage

Value

Arguments

Details

See Also