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mizer (version 2.0.0)

mizerMort: Get total mortality rate needed to project standard mizer model

Description

Calculates the total mortality rate \(\mu_i(w)\) (in units 1/year) on each species by size from predation mortality, background mortality and fishing mortality.

Usage

mizerMort(params, n, n_pp, n_other, f_mort, pred_mort, ...)

Arguments

params

A '>MizerParams object

n

A matrix of species abundances (species x size).

n_pp

A vector of the resource abundance by size

n_other

A list of abundances for other dynamical components of the ecosystem

f_mort

A two dimensional array (species x size) with the fishing mortality

pred_mort

A two dimensional array (species x size) with the predation mortality

...

Unused

Value

A two dimensional array (species x size) with the total mortality rates.

See Also

Other mizer rate functions: mizerEGrowth(), mizerEReproAndGrowth(), mizerERepro(), mizerEncounter(), mizerFMortGear(), mizerFMort(), mizerFeedingLevel(), mizerPredMort(), mizerPredRate(), mizerRDI(), mizerRates(), mizerResourceMort()