flux_from_rates

Internal helper holding the arithmetic shared by <code>getFlux.MizerParams</code> and
<code>getFlux.MizerSim</code>. Keeping it separate lets the <code>MizerSim</code> method resolve the
rate functions once and reuse them across all saved time steps.

internal

A set of classes and methods to set up and run multi-species, trait
based and community size spectrum ecological models, focused on the marine
environment.

Gustav Delius

mizer

Dynamic Multi-Species Size Spectrum Modelling

Finlay Scott

Julia Blanchard

Ken Andersen

Richard Southwell

flux_from_rates function

<dl><dt>params</dt>
<dd>A valid <code>MizerParams</code> object.</dd>
<dt>n</dt>
<dd>A matrix of species abundances (species x size).</dd>
<dt>g</dt>
<dd>Growth rate matrix (species x size), as from <code>getEGrowth()</code>.</dd>
<dt>d</dt>
<dd>Diffusion rate matrix (species x size), as from <code>getDiffusion()</code>.</dd>
<dt>rdd</dt>
<dd>Density-dependent reproduction rate vector (one per species), as
from <code>getRDD()</code>.</dd>
<dt>power</dt>
<dd>The flux at weight \(w\) is multiplied by \(w\) raised to
<code>power</code>. The default <code>power = 0</code> leaves the flux of individuals unchanged.</dd></dl>

Arguments

Assemble the flux matrix from growth, diffusion and recruitment rates — flux_from_rates

<dl>

<dt>params</dt>
<dd>A valid <code>MizerParams</code> object.</dd>


<dt>n</dt>
<dd>A matrix of species abundances (species x size).</dd>


<dt>g</dt>
<dd>Growth rate matrix (species x size), as from <code>getEGrowth()</code>.</dd>


<dt>d</dt>
<dd>Diffusion rate matrix (species x size), as from <code>getDiffusion()</code>.</dd>


<dt>rdd</dt>
<dd>Density-dependent reproduction rate vector (one per species), as
from <code>getRDD()</code>.</dd>


<dt>power</dt>
<dd>The flux at weight \(w\) is multiplied by \(w\) raised to
<code>power</code>. The default <code>power = 0</code> leaves the flux of individuals unchanged.</dd>

</dl>

flux_from_rates: Assemble the flux matrix from growth, diffusion and recruitment rates

Description

Usage

Value

Arguments