plotRelativeDataFrame

Used internally by <code>plotSpectraRelative()</code> and similar functions. The two
data frames are joined on their shared variables and the relative difference
of their y-values is plotted against the x-variable.

internal

A set of classes and methods to set up and run multi-species, trait
based and community size spectrum ecological models, focused on the marine
environment.

Gustav Delius

mizer

Dynamic Multi-Species Size Spectrum Modelling

Finlay Scott

Julia Blanchard

Ken Andersen

Richard Southwell

plotRelativeDataFrame function

<dl><dt>frame1, frame2</dt>
<dd>Data frames sharing the same first three variables (x, y
and grouping variable). The names of <code>frame1</code> are imposed on <code>frame2</code>.</dd>
<dt>params</dt>
<dd>A MizerParams object, used for the line colours.</dd>
<dt>xlab</dt>
<dd>Label for the x-axis.</dd>
<dt>xtrans</dt>
<dd>Transformation for the x-axis, e.g. <code>"log10"</code> or <code>"identity"</code>.</dd>
<dt>xlim, ylim</dt>
<dd>Numeric vectors of length two giving the axis limits. Use
<code>NA</code> to refer to the existing minimum or maximum.</dd>
<dt>highlight</dt>
<dd>Name or vector of names of the species to be highlighted.</dd>
<dt>legend_var</dt>
<dd>Name of the variable used in the legend and to determine the
line colour.</dd>
<dt>size_axis</dt>
<dd>Optional. If non-NULL, the x-axis is converted to weight
(<code>"w"</code>) or length (<code>"l"</code>).</dd></dl>

Arguments

Make a plot of the relative difference between two data frames — plotRelativeDataFrame

<dl>

<dt>frame1, frame2</dt>
<dd>Data frames sharing the same first three variables (x, y
and grouping variable). The names of <code>frame1</code> are imposed on <code>frame2</code>.</dd>


<dt>params</dt>
<dd>A MizerParams object, used for the line colours.</dd>


<dt>xlab</dt>
<dd>Label for the x-axis.</dd>


<dt>xtrans</dt>
<dd>Transformation for the x-axis, e.g. <code>"log10"</code> or <code>"identity"</code>.</dd>


<dt>xlim, ylim</dt>
<dd>Numeric vectors of length two giving the axis limits. Use
<code>NA</code> to refer to the existing minimum or maximum.</dd>


<dt>highlight</dt>
<dd>Name or vector of names of the species to be highlighted.</dd>


<dt>legend_var</dt>
<dd>Name of the variable used in the legend and to determine the
line colour.</dd>


<dt>size_axis</dt>
<dd>Optional. If non-NULL, the x-axis is converted to weight
(<code>"w"</code>) or length (<code>"l"</code>).</dd>

</dl>

plotRelativeDataFrame: Make a plot of the relative difference between two data frames

Description

Usage

Value

Arguments