mizer (version 3.4.0)

plot.ArrayResourceBySize: Plot method for ArrayResourceBySize objects

Description

See plot() for an overview of the mizer plotting system and the arguments shared by all of its methods.

Usage

# S3 method for ArrayResourceBySize
plot(
  x,
  return_data = FALSE,
  log_x = TRUE,
  log_y = TRUE,
  log = NULL,
  wlim = c(NA, NA),
  llim = c(NA, NA),
  ylim = c(NA, NA),
  size_axis = c("w", "l"),
  per_log_size = NULL,
  y_ticks = 6,
  ...
)

Value

A ggplot2 object, unless return_data = TRUE, in which case a data frame is returned.

Arguments

x

An ArrayResourceBySize object.

return_data

If TRUE, return the data frame instead of the plot.

log_x

If TRUE, use a log10 x-axis. Default is TRUE.

log_y

If TRUE, use a log10 y-axis. Default is TRUE.

log

Character string specifying which axes should use log10 scales, in the same form as the base plot() argument. For example, "x", "y", "xy" or "". If supplied, this overrides log_x and log_y.

wlim

A numeric vector of length two providing lower and upper limits for the weight (x) axis. Use NA to refer to the existing minimum or maximum.

llim

A numeric vector of length two providing lower and upper limits for the length (x) axis when size_axis = "l". Use NA to refer to the existing minimum or maximum.

ylim

A numeric vector of length two providing lower and upper limits for the value (y) axis. Use NA to refer to the existing minimum or maximum.

size_axis

Whether to plot size as weight ("w", default) or length ("l"), using the weight-length relationship in resource_params().

per_log_size

For an array that holds a density, whether to plot it per logarithmic size (TRUE) rather than per size (FALSE). The default, NULL, plots the density as it stands. An error for an array that does not hold a density.

y_ticks

The approximate number of ticks desired on the y axis.

...

Unused.

Examples

# \donttest{
plot(getResourceMort(NS_params))
plot(initialNResource(NS_params))
# }