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mlPhaser (version 0.01)

Multi-Locus Haplotype Phasing

Description

Phase haplotypes from genotypes based on a list of known haplotypes. Suited to highly diverse loci such as HLA.

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Install

install.packages('mlPhaser')

Monthly Downloads

1

Version

0.01

License

GPL (>= 2)

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Maintainer

Dave T Gerrard

Last Published

September 4th, 2012

Functions in mlPhaser (0.01)

remGeno

Extract haplotype from genotype
printHaploGroups

Print haplotype groups
simGenoFromHaplo

Simulate genotypes
listGenoToTable

Genotype list to genotype table
printHaploProbs

Print haplo group probabilities
recurseHaplos

Recurse to get haplo groups
tableGenoToList

Convert genotype table to list of lists
listValidHaplotypes

List valid haplotypes
listHaploToTable

Haplotype list to Haplotype table.
phaseReport

Best/all hapltype groups for a genotype
testHaploInGeno

Test genotype for presence of haplotype
reduceRedundantList

Remove redundant haplotype groups
mlPhaser-package

mlPhaser
getValidHaploGroups

Get haplo groups for a genotype
tableHaploToList

Haplotype table to haplotype list
getHaploGroupProb

Get haplotype group probability