mlmm.gwas.FMI

floweringDateFMI

female

male

hybrid

K.female

K.male

K.hybrid

<ul>
<li>Species: Helianthus annuus</li>
<li>Individuals: 303</li>
<li>Markers: 500</li>
</ul>

dataset

Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhj<c3><a1>lmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.

Clement Mabire

mlmm.gwas

Pipeline for GWAS Using MLMM

mlmm.gwas.FMI function

<ul>
<li>floweringDateFMI: a named numeric vector of length 303.</li>
<li>female: a factor of length 303</li>
<li>male: a factor of length 303</li>
<li>hybrid: a factor of length 303</li>
<li>Xf: a 303x500 numeric matrix</li>
<li>Xm: a 303x500 numeric matrix</li>
<li>Xfm: a 303x500 numeric matrix</li>
<li>K.female: 36x36 numeric matrix</li>
<li>K.male: 36x36 numeric matrix</li>
<li>K.hybrid: 303x303 numeric matrix</li>
</ul>

Format

Dataset for examples with the mlmm.gwas package, male+female and male+female+interaction models — mlmm.gwas.FMI

Dataset for examples with the mlmm.gwas package, male+female and male+female+interaction models

mlmm.gwas.FMI: Dataset for examples with the mlmm.gwas package, male+female and male+female+interaction models

Description

Usage

Arguments

Format

Details