mlstrOpalr (version 1.0.3)

taxonomy_opal_mlstr_get: Get available taxonomies in format used by Maelstrom Research

Description

Downloads all taxonomies from an Opal server in a specific tibble format used in the Maelstrom Research ecosystem.

Usage

taxonomy_opal_mlstr_get(opal)

Value

A tibble identifying a taxonomy (generally generated from Opal taxonomy.

Arguments

opal

Opal login attributes.

Details

Opal is the OBiBa application for data management, and Opal environments can be integrated with RStudio environments using the package opalr. The user must have adequate credentials to interact with a specific Opal environment. Some function errors produced may be associated with the handler or Opal read/write permissions.

See Also

Please see Opal documentation for complete documentation. madshapR::as_taxonomy()

Examples

if (FALSE) {

library(opalr)
library(dplyr)

opal <-
 opal.login('administrator','password',
   url ='https://opal-demo.obiba.org/')

glimpse(try(taxonomy_opal_mlstr_get(opal)))
  
}