Learn R Programming

mmnet (version 1.10.2)

checkMgrastMetagenome: Check whether the MGRAST annotation is completed

Description

Check the whether MGRAST annotation is comleted of the metagenomic sequence.

Usage

checkMgrastMetagenome(login.info, metagenome.id, public = TRUE)

Arguments

login.info
login.info a list of login info generated after user login into MGRAST which consists of webkey of the file, the invlid time of your webkey, cookie, websession and curlhandle. It is unique for each users. Only needed while checking the private project.
metagenome.id
a chracter, metagenome.id the metagenome id MGRAST assigned while user submit metagenome sequence to MGRAST.
public
logical, whether the metagenome of your MGRAST project is public

Value

  • logical, whether the metagenome annotation is completed, it will be NULL while metagenome annotation is not completed.

Examples

Run this code
checkMgrastMetagenome(metagenome.id = "4440616.3")

Run the code above in your browser using DataLab