getMgrastAnnotation

MetagenomeID

expectation negative exponent value threshold for saving hits, default is 5

evalue

minimum percent identity of matches, default is 60

identity

value for minimum alignment length cutoff, default is 15

length

a two length vecter, the source you want to download, e.g., 
c("KO","ontology") represents the ontology annotation with the KO database
, more details in MGRAST

resource

a list of login info generated after user login into MGRAST which consists of webkey of the file, the invlid time of your webkey, cookie, websession and curlhandle. It is unique for each users

login.info

The function downloads the annotation profile in MGRAST

This package gives the implementations microbiome metabolic
    network constructing and analyzing. It introduces a unique metagenomic
    systems biology approach, mapping metagenomic data to the KEGG global
    metabolic pathway and constructing a systems-level network. The
    system-level network and the next topological analysis will be of great
    help to analysis the various functional properties, including regulation
    and metabolic functionality of the metagenome.

getMgrastAnnotation: Get the annotation profile from MGRAST

Description

Usage

Arguments

Value

References

Examples