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mmod (version 1.3.2)
Modern Measures of Population Differentiation
Description
Provides functions for measuring population divergence from genotypic data.
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1.3.2
1.3.1
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Install
install.packages('mmod')
Monthly Downloads
1,896
Version
1.3.2
License
MIT + file LICENSE
Issues
7
Pull Requests
0
Stars
11
Forks
5
Repository
https://github.com/dwinter/mmod
Maintainer
David Winter
Last Published
September 15th, 2016
Functions in mmod (1.3.2)
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dist.codom
Calculate distance between individual for co-dominant locus
Gst_Hedrick
Calculate Nei's Gst using estimators for Hs and Ht
chao_bootstrap
Produce bootstrap samples from each subpopulation of a genind object
diff_stats
Calculate differentiation statistics for a genind object
D_Jost
Calculate Jost's D
as.genind.DNAbin
as.genind.DNAbin
Gst_Nei
Calculate Nei's Gst using estimators for Hs and Ht
diff_test
An exact test of population differentiation for genind objects
harmonic_mean
Harmonic mean
jacknife_populations
Create jacknife samples of a genind object by population
Phi_st_Meirmans
Calculate Phi_st from a genind object
summarise_bootstrap
Apply a differentiation statistic to a bootstrap sample
rgenotypes
Randomly create genotypes
mmod
Modern Measures of Differentiation
pairwise_D
Calculates pairwise values of Jost's D
pairwise_Gst_Hedrick
Calculates pairwise values of Hedrick's G'st
pairwise_Gst_Nei
Calculates pairwise values of Nei's Gst