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mmod (version 1.0)
Modern measures of population differentiation
Description
mmod provides functions for measuring population divergence from genotypic data
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Install
install.packages('mmod')
Monthly Downloads
1,606
Version
1.0
License
MIT
Issues
7
Pull Requests
0
Stars
11
Forks
5
Repository
https://github.com/dwinter/mmod
Maintainer
David Winter
Last Published
August 11th, 2012
Functions in mmod (1.0)
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D_Jost
Calculate Jost's D
dist.codom
Calculate distance between individual for co-dominant locus
Phi_st_Meirmans
Calculate Phi_st from a genind object
harmonic_mean
Harmonic mean
chao_bootstrap
Produce bootstrap samples from each subpopulation of a genind object
rgenotypes
Randomly create genotypes
Gst_Nei
Calculate Nei's Gst using estimators for Hs and Ht
summarise_bootstrap
Apply a differentiation statistic to a bootstrap sample
diff_stats
Calculate differentiation statistics for a genind object
Gst_Hedrick
Calculate Nei's Gst using estimators for Hs and Ht
mmod
Modern Measures of Differentiation
jacknife_populations
Create jacknife samples of a genind object by population
pairwise_Gst_Nei
Calculates pairwise values of Nei's Gst
pairwise_Gst_Hedrick
Calculates pairwise values of Hedrick's G'st
diff_test
An exact test of population differentiation for genind objects
pairwise_D
Calculates pairwise values of Jost's D