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mmod (version 1.2.1)

Modern measures of population differentiation

Description

mmod provides functions for measuring population divergence from genotypic data

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Install

install.packages('mmod')

Monthly Downloads

1,494

Version

1.2.1

License

MIT + file LICENSE

Issues

8

Pull Requests

0

Stars

13

Forks

4

Maintainer

David Winter

Last Published

August 3rd, 2014

Functions in mmod (1.2.1)

harmonic_mean

Harmonic mean
pairwise_Gst_Nei

Calculates pairwise values of Nei's Gst
Gst_Hedrick

Calculate Nei's Gst using estimators for Hs and Ht
chao_bootstrap

Produce bootstrap samples from each subpopulation of a genind object
pairwise_D

Calculates pairwise values of Jost's D
pairwise_Gst_Hedrick

Calculates pairwise values of Hedrick's G'st
Gst_Nei

Calculate Nei's Gst using estimators for Hs and Ht
Phi_st_Meirmans

Calculate Phi_st from a genind object
diff_stats

Calculate differentiation statistics for a genind object
mmod

Modern Measures of Differentiation
summarise_bootstrap

Apply a differentiation statistic to a bootstrap sample
diff_test

An exact test of population differentiation for genind objects
as.genind.DNAbin

as.genind.DNAbin
D_Jost

Calculate Jost's D
dist.codom

Calculate distance between individual for co-dominant locus
jacknife_populations

Create jacknife samples of a genind object by population
rgenotypes

Randomly create genotypes