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mmod (version 1.3.1)

Modern Measures of Population Differentiation

Description

Provides functions for measuring population divergence from genotypic data.

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Install

install.packages('mmod')

Monthly Downloads

1,494

Version

1.3.1

License

MIT + file LICENSE

Issues

8

Pull Requests

0

Stars

13

Forks

4

Maintainer

David Winter

Last Published

August 27th, 2015

Functions in mmod (1.3.1)

Gst_Nei

Calculate Nei's Gst using estimators for Hs and Ht
pairwise_Gst_Nei

Calculates pairwise values of Nei's Gst
Gst_Hedrick

Calculate Nei's Gst using estimators for Hs and Ht
diff_stats

Calculate differentiation statistics for a genind object
as.genind.DNAbin

as.genind.DNAbin
harmonic_mean

Harmonic mean
jacknife_populations

Create jacknife samples of a genind object by population
chao_bootstrap

Produce bootstrap samples from each subpopulation of a genind object
mmod

Modern Measures of Differentiation
diff_test

An exact test of population differentiation for genind objects
rgenotypes

Randomly create genotypes
D_Jost

Calculate Jost's D
pairwise_D

Calculates pairwise values of Jost's D
summarise_bootstrap

Apply a differentiation statistic to a bootstrap sample
Phi_st_Meirmans

Calculate Phi_st from a genind object
pairwise_Gst_Hedrick

Calculates pairwise values of Hedrick's G'st
dist.codom

Calculate distance between individual for co-dominant locus