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molaR (version 3.0)

Dental Surface Complexity Measurement Tools

Description

Surface topography calculations of Dirichlet's normal energy, relief index, and orientation patch count for teeth using scans of enamel caps. Importantly, for the relief index and orientation patch count calculations to work, the scanned tooth files must be oriented with the occlusal plane parallel to the x and y axes, and perpendicular to the z axis. The files should also be simplified, and smoothed in some other software prior to uploading into R.

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Version

Install

install.packages('molaR')

Monthly Downloads

312

Version

3.0

License

ACM

Maintainer

James D. Pampush

Last Published

April 8th, 2016

Functions in molaR (3.0)

RFI_Legend

function for building a legend for RFI
index_paired_directed_faces

Index of paired faces with directions
face_areas

Function to calculate face areas.
DNE3d

Plot results of a DNE analysis of a surface
DNE

Calculate Dirichlet normal energy of a surface
cSize

Centroid Size Function
Face_Normals

Function to find Face Normals
Directional_Bins

This bins the faces into directional categories
molaR_Batch

Run a batch of molaR analyses
edge_vertices

Function for finding the edge vertices
remove_outliers

Mask outliers on some faces
clustered_patches

A clustering function
OPCr

Calculate average orientation patch count after several rotations
remove_boundary_faces

Remove boundary faces
RFI3d

Plot 3D and 2D areas of a mesh used to calculate relief index
OPC3d

Plot results of OPC analysis of a surface
patches_per

A function for patches within each face
molaR_Clean

Clean up problem ply files
ex_tooth1

4149_DU-LP-09_LM1
read.AVIZO.ply

Read mesh data from ply files saved by AVIZO
OPC

Calculate orientation patch count of a surface
DNE_Legend

Make legend for DNE3d plot
bgplot3d_XQuartz

function for correcting new XQuartz issues
patch_details

Function for gathering patch details for each Orientation patch
Equal_Vertex_Normals

Important function for re-doing the vertex normals for the DNE calculation.
vertex_to_face_list

function for making a list of faces on each vertex
compute_energy_per_face

Function will compute the DNE per face.
OPC_Legend

function for building a legend in OPC plots
tr

Trace function
patches_for_each_direction

Function for gathering the patches for each direction
RFI

Calculate Boyer's (2008) relief index for a surface
ex_tooth2

4147_DU-LP-07_LM1