momentuHierHMM

Constructor of <code>momentuHierHMM</code> objects

Extended tools for analyzing telemetry data using generalized hidden Markov models. Features of momentuHMM (pronounced ``momentum'') include data pre-processing and visualization, fitting HMMs to location and auxiliary biotelemetry or environmental data, biased and correlated random walk movement models, hierarchical HMMs, multiple imputation for incorporating location measurement error and missing data, user-specified design matrices and constraints for covariate modelling of parameters, random effects, decoding of the state process, visualization of fitted models, model checking and selection, and simulation. See McClintock and Michelot (2018) <doi:10.1111/2041-210X.12995>.

Brett T McClintock

momentuHMM

Maximum Likelihood Analysis of Animal Movement Behavior Using
Multivariate Hidden Markov Models

momentuHierHMM function

<dl><dt>m</dt>
<dd>A list of attributes of the fitted model: <code>mle</code> (the maximum likelihood estimates of
the parameters of the model), <code>data</code> (the <code>fitHMM</code> data), <code>mod</code> (the object
returned by the <code>fitHMM</code> numerical optimizer <code>nlm</code> or <code>optim</code>), <code>conditions</code> (conditions used to fit
the model: <code>hierStates</code>, <code>hierDist</code>, <code>zeroInflation</code>, <code>estAngleMean</code>, <code>circularAngleMean</code>
<code>stationary</code>, <code>formula</code>, <code>userBounds</code>, <code>bounds</code>, <code>workBounds</code>, <code>DM</code>, etc.), 
<code>stateNames</code>, and <code>rawCovs</code> (optional -- only if there are transition probability matrix covariates in the data).</dd></dl>

Arguments

Constructor of momentuHierHMM objects — momentuHierHMM

<dl>

<dt>m</dt>
<dd>A list of attributes of the fitted model: <code>mle</code> (the maximum likelihood estimates of
the parameters of the model), <code>data</code> (the <code>fitHMM</code> data), <code>mod</code> (the object
returned by the <code>fitHMM</code> numerical optimizer <code>nlm</code> or <code>optim</code>), <code>conditions</code> (conditions used to fit
the model: <code>hierStates</code>, <code>hierDist</code>, <code>zeroInflation</code>, <code>estAngleMean</code>, <code>circularAngleMean</code>
<code>stationary</code>, <code>formula</code>, <code>userBounds</code>, <code>bounds</code>, <code>workBounds</code>, <code>DM</code>, etc.), 
<code>stateNames</code>, and <code>rawCovs</code> (optional -- only if there are transition probability matrix covariates in the data).</dd>

</dl>

momentuHierHMM: Constructor of `momentuHierHMM` objects

Description

Usage

Value

Arguments