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momr (version 1.1)

Mining Metaomics Data (MetaOMineR)

Description

'MetaOMineR' suite is a set of R packages that offers many functions and modules needed for the analyses of quantitative metagenomics data. 'momr' is the core package and contains routines for biomarker identification and exploration. Developed since the beginning of field, 'momr' has evolved and is structured around the different modules such as preprocessing, analysis, vizualisation, etc. See package help for more information.

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Version

Install

install.packages('momr')

Monthly Downloads

24

Version

1.1

License

Artistic-2.0

Maintainer

Last Published

July 27th, 2015

Functions in momr (1.1)

connectivity

connectivity
presenceScore

presenceScore
extractProfiles

extractProfiles
plotBarcode

plotBarcode
mgs_hs_3.3_metahit_sup500

mgs_hs_3.3_metahit_sup500
projectOntoMGS

projectOntoMGS
downsizeGC.all

downsizeGC.all
filterListGenebags

filterListGenebags
computeFilteredVectors

computeFilteredVectors
plotMGSQuality

plotMGSQuality
countSampledGenesGC

countSampledGenesGC
watchProgress

watchProgress
buildMgsFinal

buildMgsFinal @date December 20th 2013
abondanceScore

abondanceScore
computeSignalMetrics

computeSignalMetrics
testRelations

testRelations
splitData

splitData
downsizeMatrix

downsizeMatrix
hs_3.3_metahit_genesize

hs_3.3_metahit_genesize
plotPvals

plotPvals
downsizedRichnessL2T

downsizedRichnessL2T
extractSignificant

extractSignificant
plotCors

plotCors
indexReads

indexReads
mapResults

mapResults
filterMat

filterMat
indexReadsGC

indexReadsGC
sampleRandomly

sampleRandomly
plotBarcodeBW

plotBarcodeBW
downsizeGC

downsizeGC
lmp

lmp
countSampledGenes

countSampledGenes
hs_3.3_metahit_sample_dat_freq

hs_3.3_metahit_sample_dat_freq
selectListSize

selectListSize
plotCors2

plotCors2
momr-package

Mining Metaomics Data In R
hierClust

hierClust
launchTask

launchTask
filt.hierClust

filt.hierClust
plotBarcode2

plotBarcode2
normFreqRPKM

normFreqRPKM
aggregateProfiles

aggregateProfiles
phenoPairwiseRelations

phenoPairwiseRelations
profiles2Genebags

profiles2Genebags
computeUpsizedGC

computeUpsizedGC
deleteData

deleteData
normFreqTC

normFreqTC
hs_3.3_metahit_sample_dat_raw

hs_3.3_metahit_sample_dat_raw