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monitoR (version 1.0.3)

Acoustic Template Detection in R

Description

Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.

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Version

Install

install.packages('monitoR')

Monthly Downloads

605

Version

1.0.3

License

GPL-2

Maintainer

Sasha Hafner

Last Published

April 23rd, 2015

Functions in monitoR (1.0.3)

batchDetection

Batch Template Detection
TemplateList-class

Class "TemplateList"
makeTemplate

Make an Acoustic Template
bindEvents

Summarize/Archive Manually Derived Sound Events
collapseClips

Summarize/Archive Song Events
templateComment

Query or Set Template Cutoffs
compareTemplates

Compare Performance of Templates
internals

monitoR Internal Functions
getDetections

Extract Detections or Peaks from a detectionList Object
cutw

Extract Shorter Wave Objects from other Wave Objects
dbDownload

Retrieve Card-Recorder ID Values or Survey Names from a Database
Template-class

Class "Template"
dbUploadSurvey

Upload Survey Metadata to an Acoustics Database
mp3Subsamp

Extract Short Surveys from Longer mp3 Recordings
templateMatching

Calculate Spectrogram Template Matching Scores
templateNames

Names of Templates
dbDownloadResult

Create detectionList Objects from Data Stored in a Database
templateCutoff

Query or Set Template Cutoffs
showPeaks

View or Verify Detections or Peaks
timeAlign

Condense Detections or Peaks from Multiple Templates
extract-methods

Indexing (Extraction) Methods for monitoR Package
dbUploadAnno

Upload Spectrogram Annotations to an Acoustics Database
dbUploadResult

Upload Detection Results to an Acoustics Database
changeSampRate

Resample Wave objects
writeTemplates

Write Acoustic Templates to Text Files
fileCopyRename

Copy and Rename Sound Files from Portable Media
viewSpec

Interactively View and Annotate Spectrograms
readTemplates

Read Acoustic Templates from a Local Disk
dbDownloadTemplate

Retrieve templates from an acoustics database
detectionList-class

Class "detectionList"
findPeaks

Finding Score Peaks and Detections in a templateScores Object
dbUploadTemplate

Upload Acoustic Templates to a Database
templatePath

Song clip path of Templates
btnw

Black-Throated Green Warbler (Setophaga virens) Song
eventEval

Evaluate Detected Events with Known Event Sources and Times
templateScores-class

Class "templateScores"
survey_anno

Annotations for survey
getTemplates

Extract a Template List
survey

Sample Acoustic Survey (Short)
specCols

Color Vectors for Spectrograms
monitoR

Automated Acoustic Monitoring
combineTemplates

Combine Acoustic Template Lists
oven

Ovenbird (Seiurus aurocapilla) Song
dbSchema

Upload a MySQL Database Schema to Create Tables in an Acoustics Database
show-methods

Methods for the show and summary Functions
readMP3

Read MP3 Files into a Wave Object
plot-methods

Methods for the plot Function