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monitoR (version 1.0.4)

Acoustic Template Detection in R

Description

Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.

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Version

Install

install.packages('monitoR')

Monthly Downloads

605

Version

1.0.4

License

GPL-2

Maintainer

Sasha Hafner

Last Published

September 18th, 2015

Functions in monitoR (1.0.4)

batchDetection

Batch Template Detection
dbDownloadTemplate

Retrieve templates from an acoustics database
dbDownloadResult

Create detectionList Objects from Data Stored in a Database
detectionList-class

Class "detectionList"
getTemplates

Extract a Template List
show-methods

Methods for the show and summary Functions
eventEval

Evaluate Detected Events with Known Event Sources and Times
showPeaks

View or Verify Detections or Peaks
changeSampRate

Resample Wave objects
templateNames

Names of Templates
extract-methods

Indexing (Extraction) Methods for monitoR Package
getDetections

Extract Detections or Peaks from a detectionList Object
dbSchema

Upload a MySQL Database Schema to Create Tables in an Acoustics Database
survey_anno

Annotations for survey
monitoR

Automated Acoustic Monitoring--overview and examples
TemplateList-class

Class "TemplateList"
plot-methods

Methods for the plot Function
dbUploadTemplate

Upload Acoustic Templates to a Database
dbUploadResult

Upload Detection Results to an Acoustics Database
collapseClips

Summarize/Archive Song Events
specCols

Color Vectors for Spectrograms
compareTemplates

Compare Performance of Templates
templatePath

Song clip path of Templates
writeTemplates

Write Acoustic Templates to Text Files
internals

monitoR Internal Functions
combineTemplates

Combine Acoustic Template Lists
templateMatching

Calculate Spectrogram Template Matching Scores
readMP3

Read MP3 Files into a Wave Object
bindEvents

Summarize/Archive Manually Derived Sound Events
oven

Ovenbird (Seiurus aurocapilla) Song
mp3Subsamp

Extract Short Surveys from Longer mp3 Recordings
makeTemplate

Make an Acoustic Template
dbDownload

Retrieve Card-Recorder ID Values or Survey Names from a Database
viewSpec

Interactively View and Annotate Spectrograms
btnw

Black-Throated Green Warbler (Setophaga virens) Song
dbUploadAnno

Upload Spectrogram Annotations to an Acoustics Database
timeAlign

Condense Detections or Peaks from Multiple Templates
cutw

Deprecated Function to Extract Shorter Wave Objects from other Wave Objects
templateScores-class

Class "templateScores"
fileCopyRename

Copy and Rename Sound Files from Portable Media
findPeaks

Find Score Peaks and Detections in a templateScores Object
templateCutoff

Query or Set Template Cutoffs
Template-class

Class "Template"
readTemplates

Read Acoustic Templates from a Local Disk
cutWave

Extract Shorter Wave Objects from other Wave Objects
dbUploadSurvey

Upload Survey Metadata to an Acoustics Database
templateComment

Query or Set Template Cutoffs
survey

Sample Acoustic Survey (Short)