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monitoR (version 1.0.7)

Acoustic Template Detection in R

Description

Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.

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Version

Install

install.packages('monitoR')

Monthly Downloads

593

Version

1.0.7

License

GPL-2

Maintainer

Sasha Hafner

Last Published

February 14th, 2018

Functions in monitoR (1.0.7)

cutWave

Extract Shorter Wave Objects from other Wave Objects
eventEval

Evaluate Detected Events with Known Event Sources and Times
templateComment

Query or Set Template Cutoffs
fileCopyRename

Copy and Rename Sound Files from Portable Media
templateMatching

Calculate Spectrogram Template Matching Scores
writeTemplates

Write Acoustic Templates to Text Files
readMP3

Read MP3 Files into a Wave Object
getTemplates

Extract a Template List
findPeaks

Find Score Peaks and Detections in a templateScores Object
show-methods

Methods for the show and summary Functions
templateNames

Names of Templates
templateCutoff

Query or Set Template Cutoffs
plot-methods

Methods for the plot Function
getDetections

Extract Detections or Peaks from a detectionList Object
readTemplates

Read Acoustic Templates from a Local Disk
templatePath

Song clip path of Templates
dbUploadAnno

Upload Spectrogram Annotations to an Acoustics Database
oven

Ovenbird (Seiurus aurocapilla) Song
dbUploadResult

Upload Detection Results to an Acoustics Database
mp3Subsamp

Extract Short Surveys from Longer mp3 Recordings
showPeaks

View or Verify Detections or Peaks
templateScores-class

Class "templateScores"
internals

monitoR Internal Functions
survey

Sample Acoustic Survey (Short)
survey_anno

Annotations for survey
timeAlign

Condense Detections or Peaks from Multiple Templates
specCols

Color Vectors for Spectrograms
viewSpec

Interactively View and Annotate Spectrograms
compareTemplates

Compare Performance of Templates
changeSampRate

Resample Wave objects
Template-class

Class "Template"
btnw

Black-Throated Green Warbler (Setophaga virens) Song
batchDetection

Batch Template Detection
collapseClips

Summarize/Archive Song Events
combineTemplates

Combine Acoustic Template Lists
TemplateList-class

Class "TemplateList"
dbDownload

Retrieve Card-Recorder ID Values or Survey Names from a Database
dbUploadSurvey

Upload Survey Metadata to an Acoustics Database
bindEvents

Summarize/Archive Manually Derived Sound Events
dbDownloadResult

Create detectionList Objects from Data Stored in a Database
monitoR

Automated Acoustic Monitoring--overview and examples
makeTemplate

Make an Acoustic Template
dbDownloadTemplate

Retrieve templates from an acoustics database
dbUploadTemplate

Upload Acoustic Templates to a Database
detectionList-class

Class "detectionList"
extract-methods

Indexing (Extraction) Methods for monitoR Package
dbSchema

Upload a MySQL Database Schema to Create Tables in an Acoustics Database