cell_data_set

cell_data_set-class

The main class used by Monocle3 to hold single-cell expression data.
cell_data_set extends the Bioconductor SingleCellExperiment class.

Monocle 3 performs clustering, differential expression and
trajectory analysis for single-cell expression experiments. It orders
individual cells according to progress through a biological process,
without knowing ahead of time which genes define progress through that
process. Monocle 3 also performs differential expression analysis,
clustering, visualization, and other useful tasks on single-cell expression
data.  It is designed to work with RNA-Seq data, but could be used with
other types as well.

Cole Trapnell

monocle3

Clustering, differential expression, and trajectory analysis for single-
cell RNA-Seq

cell_data_set function

<dl class="dl-horizontal">
<dt><code>preprocess_aux</code></dt><dd>SimpleList, auxiliary information from preprocessing.</dd></dl><dt><code>reduce_dim_aux</code></dt><dd>SimpleList, auxiliary information from reduced
dimension.</dd><dt><code>principal_graph_aux</code></dt><dd>SimpleList, auxiliary information from principal
graph construction</dd><dt><code>principal_graph</code></dt><dd>SimpleList of igraph objects containing principal
graphs for different dimensionality reduction.</dd><dt><code>clusters</code></dt><dd>SimpleList of cluster information for different
dimensionality reduction.</dd>

cell_data_set: The cell_data_set class

Description

Arguments

Fields

Details