monogeneaGM (version 1.1)

ligophorus_shape: Shape variable data for 13 Ligophorus species

Description

This data set contains shape variable data for samples from 13 Ligophorus species.

Usage

data(ligophorus_shape)

Format

A matrix containing 437 rows (samples) and 44 columns (shape variables). The shape variables are the GPA-coordinates of the 11 landmarks for both ventral and dorsal anchors. GPA was performed using the geomorph R package (Adams & Otarola-Castillo, 2013; Version 3.0.0).

Source

Khang TF, Soo OYM, Tan WB, Lim LHS. (2016). Monogenean anchor morphometry: systematic value, phylogenetic signal, and evolution. PeerJ 4:e1668.

Details

All specimens in this data set have quality score above 10.

References

Adams DC, Otarola-Castillo E. (2013). geomorph: an R package for the collection and analysis of geometric morphometric shape data. Methods in Ecology and Evolution 4:393-399.

See Also

Qscore

Examples

library(gplots)

data(ligophorus_shape)
data(spcolmap)

#shape variables unsorted
heatmapAnnot(ligophorus_shape,labcol=spcolmap$color,xlab="Specimens",genus="L. ")