mort (version 0.0.1)

resmax: Maximum residence duration

Description

Find the maximum duration of a single residence in the dataset that occurred before a station change (i.e., the animal can be assumed to be alive)

Usage

resmax(
  data,
  ID,
  station,
  res.start,
  residences,
  stnchange,
  drift = FALSE,
  verbose = TRUE
)

Value

a dataframe with the residence information for the longest residence for each tag ID that occurred before the most recent station/location change.

Arguments

data

a dataframe of residence events. Residence events must include tag ID, location name, start time, and duration.

ID

a string of the name of the column in data that holds the tag or sample IDs.

station

a string of the name of the column in data that holds the station name or receiver location.

res.start

a string of the name of the column in data that holds the start date and time. Must be specified and in POSIXt if type="manual".

residences

a character string with the name of the column in data that holds the duration of the residence events.

stnchange

a dataframe with the start time and location of the most recent station or location change. Must use the same column names as data.

drift

indicates if drift residence events should be included in determining the maximum residence duration

verbose

option to display progress bar as function is run. Default is TRUE.

Examples

# Identify most recent station change
station.change<-stationchange(data=events,type="mort",ID="ID",
station="Station.Name",verbose=FALSE)

longest_res_events<-resmax(data=events,ID="ID",station="Station.Name",
res.start="ResidenceStart",residences="ResidenceLength.days",
stnchange=station.change,verbose=FALSE)
head(longest_res_events)