.adapGridMosaicsZ0_IO

.adapGridMosaicsZ0_OS

.adapGridMosaicsZ0_TS

.calcModelBIC

.calcPN

.calMDZ1_2S

.computeStat

.emZ1_2S

.eStepZ1_2S

.exportBED

.exportGFF

.exportTXT

.getParamZ0

.getPH_1S

.getPH_2S

.getPi0

.margDist_1S

.margDist_2S

.margDistZ1_1S

.margDistZ1_2S

.mosaicsFit_IO

.mosaicsFit_OS

.mosaicsFit_TS

.mosaicsZ0_IO

.mosaicsZ0_OS

.mosaicsZ0_TS

.mosaicsZ1_1S

.mosaicsZ1_2S

.mStepZ1_2S

.peakCall

.plotGOF

.processBin_MGC

.processBin_MGCX

.processBin_X

.rlmFit_IO

.rlmFit_OS

.rlmFit_TS

.reportSummary

.validDataType

.validLocation

.validType

conv_1S

conv_2S

internal

mosaics-internal

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Dongjun Chung

mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

mosaics-internal function

Internal mosaics objects

mosaics-internal: Internal mosaics objects

Description

Arguments

Details