motifSig-class


  An object of class <code>"motifSig"</code> represents the output of function <a rd-options="" href="/link/motifSignature?package=motifStack&version=1.16.0" data-mini-rdoc="motifStack::motifSignature">motifSignature</a>


classes

The motifStack package is designed for graphic
representation of multiple motifs with different similarity
scores. It works with both DNA/RNA sequence motif and amino
acid sequence motif. In addition, it provides the flexibility
for users to customize the graphic parameters such as the
font type and symbol colors.

Jianhong Ou

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino
acid sequence

motifSig-class function

Objects can be created by calls of the form <code>new("motifSig", signature, freq, nodelist, gpcol)</code>.

Objects from the Class

<dl>
    <dt><code>signatures</code></dt><dd>list object of class <code>"pfm"</code></dd> <dt><code>freq</code></dt><dd>code"numeric" signature frequency</dd> <dt><code>nodelist</code></dt><dd>list object of class <code>"<a rd-options="" href="/link/ouNode?package=motifStack&version=1.16.0" data-mini-rdoc="motifStack::ouNode">ouNode</a>"</code></dd> <dt><code>gpcol</code></dt><dd>code"character" signature group color sets</dd> </dl> 

Slots

<dl>
   	<dt>signatures</dt><dd><code>signature(object = "motifSig")</code> return the signatures of motifSig </dd> <dt>frequence</dt><dd><code>signature(object = "motifSig")</code> return the frequency of motifSig</dd> <dt>nodelist</dt><dd><code>signature(object = "motifSig")</code> return the nodelist of motifSig</dd> <dt>sigColor</dt><dd><code>signature(object = "motifSig")</code> return the group color sets of motifSig</dd> </dl> 

Methods


  An object of class <code>"motifSig"</code> represents the output of function <a rd-options='' href='motifSignature'>motifSignature</a>


motifSig-class: Class `"motifSig"`

Description

Arguments

Objects from the Class

Slots

Methods