ouNode

ouNode-class

$,ouNode-method

$<-,ouNode-method

An object of class <code>"ouNode"</code> represents a motif node in a cluster tree

classes

The motifStack package is designed for graphic
representation of multiple motifs with different similarity
scores. It works with both DNA/RNA sequence motif and amino
acid sequence motif. In addition, it provides the flexibility
for users to customize the graphic parameters such as the
font type and symbol colors.

Jianhong Ou

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino
acid sequence

ouNode-class function

Objects can be created by calls of the form <code>new("ouNode", left, right, parent, distl, distr, sizel, sizer)</code>.

Objects from the Class

<dl>
    <dt><code>left</code>:</dt><dd>character indicates the name of left leave</dd> <dt><code>right</code>:</dt><dd>character indicates the name of right leave</dd> <dt><code>parent</code>:</dt><dd>character indicates the name of parent node</dd> <dt><code>distl</code>:</dt><dd>numeric indicates the distance of left leave</dd> <dt><code>distr</code>:</dt><dd>numeric indicates the distance of right leave</dd> <dt><code>sizel</code>:</dt><dd>numeric indicates the size of left leave</dd> <dt><code>sizer</code>:</dt><dd>numeric indicates the size of right leave</dd> </dl> 

Slots

<dl>
        <dt>$, $&lt;-</dt><dd>Get or set the slot of <code><a rd-options="" href="/link/ouNode?package=motifStack&version=1.16.0" data-mini-rdoc="motifStack::ouNode">ouNode</a></code></dd> </dl> 

ouNode-class: Class `ouNode`

Description

Arguments

Objects from the Class

Slots

Methods

Examples