Character displacement likelihood ratio test
Simulate character displacement data wrapper
Calculation of Brownian variance.
Simulate character displacement data
Fast PLGS estimation based on contrasts
Identify nodes and tips descended from a node
Models Of Trait Macroevolution On Trees
prune tree and data to lineages present in a time bin in the past
Confidence intervals for rate parameters
Finch tree
Finch phenotype data
Log-likelihood rate estimation for traits and phylogenies
Calculate fair proportions phylogenetic diversity metric
Drop tips from a phylogenetic tree while preserving deleted nodes
Get times for nodes and tips
Sort data and remove missing entries for tree and trait data
Sample hidden speciation events along branches of a tree
Calculation of Brownian (co)variance using independent contrasts.
Identify shifts in the rate of trait diversification
plot a univariate continuous trait data on a phylogeny
Calculation of phylogenetically corrected mean.
Phylogenetic tree transformations
Maximum likelihood rate estimation for traits and phylogenies
Log-likelhood for models of trait evolution.
Log-likelihood estimation for traits and phylogenies
Bayesian MCMC for models of trait evolution
Maximum likelihood for models of trait evoluion
Tree plotting for rates
Identify shifts in the rate of trait diversification through time
Conversion among data and phylogeny objects
plot the output from transformPhylo.MCMC
Phylogenetic tree transformations
Mammal data
Anolis phenotype data
Finch allopatric data
add a fossil to an interior branch of a time-scaled phylogeny
Anolis phylogeny
Maximum likelihood rate estimation for traits and phylogenies
Conversion among data and phylogeny objects
Blomberg's K
Estimate Blomberg's K (Blomberg et al. 2003)
Conversion among data and phylogeny objects
Calculate multiple-test cut-off