motmot.2.0 (version 1.1.2)

pic.motmot: Phylogenetically independent contrasts (internal)

Description

Calculates phylogenetically independent contrasts.

Usage

pic.motmot(x, phy)

Arguments

x

A matrix of trait values with taxon names as rownames.

phy

An object of class "phylo" (see ape package).

Value

contr A matrix with two columns containing raw contrasts in the first column and their expected variances in the second column.

root.v Expected variances of branches either side of root

V Expected variance at the root

Details

Extracts values for contrasts, expected variances using contrasts by calling pic.

References

Felsenstein J. 1985. Phylogenies and the comparative method. American Naturalist 125, 1-15.