nLogLike_rcpp

nbStates

Matrix of regression coefficients for the transition probabilities

beta

covs

A <code><a href="/link/moveData?package=moveHMM&version=1.0" rd-options="" data-mini-rdoc="moveHMM::moveData">moveData</a></code> object of the observations

data

stepDist

The name of the turning angle distribution

angleDist

State-dependent parameters of the step length distribution

stepPar

State-dependent parameters of the turning angle distribution

anglePar

delta

Vector of indices of the rows at which the data switches to another animal

aInd

<code>true</code> if zero-inflation is included in the step length distribution,
<code>false</code> otherwise.

zeroInflation

<code>false</code> if there are covariates. If <code>true</code>, the initial distribution is considered
equal to the stationary distribution. Default: <code>false</code>.

stationary

Computation of the negative log-likelihood (forward algorithm - written in C++)

Animal movement modelling using hidden Markov models. Pre-processing of tracking data, fitting HMMs to movement data, visualization of data and fitted model...

nLogLike_rcpp: Negative log-likelihood

Description

Usage

Arguments

Value