trMatrix_rcpp

Computation of the transition probability matrix, as a function of the covariates and the regression
parameters. Written in C++. Used in <code>fitHMM</code>, <code>logAlpha</code>, <code>logBeta</code>,
<code>plot.moveHMM</code>, <code>pseudoRes</code>, and <code>viterbi</code>.

Provides tools for animal movement modelling using hidden Markov
models. These include processing of tracking data, fitting hidden Markov models
to movement data, visualization of data and fitted model, decoding of the state
process, etc. <doi:10.1111/2041-210X.12578>.

Theo Michelot

moveHMM

Animal Movement Modelling using Hidden Markov Models

Roland Langrock

Toby Patterson

Brett McClintock

Eric Rexstad

trMatrix_rcpp function

<dl><dt>nbStates</dt>
<dd>Number of states</dd>
<dt>beta</dt>
<dd>Matrix of regression parameters</dd>
<dt>covs</dt>
<dd>Matrix of covariate values</dd></dl>

Arguments

Transition probability matrix — trMatrix_rcpp

<dl>

<dt>nbStates</dt>
<dd>Number of states</dd>


<dt>beta</dt>
<dd>Matrix of regression parameters</dd>


<dt>covs</dt>
<dd>Matrix of covariate values</dd>

</dl>

trMatrix_rcpp: Transition probability matrix

Description

Usage

Value

Arguments