Learn R Programming

mpMap2 (version 1.0.4)

listCodingErrorsInfiniteSelfing: Generate a list of encoding errors assuming infinite selfing

Description

Generate a list of encoding errors assuming infinite selfing

Usage

listCodingErrorsInfiniteSelfing(founders, finals)

Arguments

founders

Genetic data for the founding lines of the population

finals

Genetic data for the final lines of the population

Value

List with the following entries:

finals

Markers with an invalid observed value.

null

Markers with a missing value for a founding line, for which the are observations for at least one genetic line.

missingHetData

Markers for which a homozygote did not have an encoding.

invalidHetData

Markers for which the heterozygote encoding data was invalid.

Details

Generate a list of encoding errors assuming infinite selfing. Given the infinite selfing assumption, no information about heterozygote encoding is required.