mpactr (version 0.2.1)

plot_qc_tree: Visualize Filtering Summary as Tree Map

Description

plot_qc_tree() visualizes the filtering summary as a treemap. Ion status (see qc_summary()) is reported here as percentage of all pre-filtered ions.

Usage

plot_qc_tree(mpactr_object)

Value

a tree map plot of class ggplot.

Arguments

mpactr_object

an mpactr_object.

Examples

data <- import_data(
  example_path("coculture_peak_table.csv"),
  example_path("metadata.csv"),
  format = "Progenesis"
)

data_filter <- filter_mispicked_ions(data,
  ringwin = 0.5,
  isowin = 0.01,
  trwin = 0.005,
  max_iso_shift = 3,
  merge_peaks = TRUE
)

plot_qc_tree(data_filter)