mppData_mdf_pheno

Modify the phenotypic values of a <code>mppData</code> object.

Analysis of experimental multi-parent populations to detect regions
of the genome (called quantitative trait loci, QTLs) influencing
phenotypic traits measured in unique and multiple environments.
The population must be composed of crosses between a set of at
least three parents (e.g. factorial design, 'diallel', or nested
association mapping). The functions cover data processing,
QTL detection, and results visualization. The implemented methodology
is described in Garin, Wimmer, Mezmouk, Malosetti and van Eeuwijk (2017)
<doi:10.1007/s00122-017-2923-3>, in Garin, Malosetti
and van Eeuwijk (2020) <doi: 10.1007/s00122-020-03621-0>,
and in Garin, Diallo, Tekete, Thera, ..., and Rami (2024) <doi: 10.1093/genetics/iyae003>.

Vincent Garin

mppR

Multi-Parent Population QTL Analysis

Valentin Wimmer

Dietrich Borchardt

Fred van Eeuwijk

Marcos Malosetti

mppData_mdf_pheno function

<dl><dt>mppData</dt>
<dd>An object of class <code>mppData</code>.</dd>
<dt>pheno</dt>
<dd>Two columns <code>data.frame</code> with : 1) <code>character</code>
genotypes identifiers; 2) <code>numeric</code> trait values. The genotypes
identifiers must be identical to <code>mppData$geno.id</code>. The trait value identifiers
must correspond to a trait already in the mppData object.</dd></dl>

Arguments

Author

Modify the phenotypic values of a mppData object — mppData_mdf_pheno

<dl>

<dt>mppData</dt>
<dd>An object of class <code>mppData</code>.</dd>


<dt>pheno</dt>
<dd>Two columns <code>data.frame</code> with : 1) <code>character</code>
genotypes identifiers; 2) <code>numeric</code> trait values. The genotypes
identifiers must be identical to <code>mppData$geno.id</code>. The trait value identifiers
must correspond to a trait already in the mppData object.</dd>

</dl>

mppData_mdf_pheno: Modify the phenotypic values of a mppData object

Description

Usage

Value

Arguments

Author

See Also

Examples