mpwR (version 0.1.5.1)

plot_ID_barplot: Individual Barplots - Identifications

Description

Plot number of achieved identifications per analysis.

Usage

plot_ID_barplot(
  input_list,
  level = c("Precursor.IDs", "Peptide.IDs", "Protein.IDs", "ProteinGroup.IDs")
)

Value

This function returns a list with a barplot for each analysis.

Arguments

input_list

A list with data frames and respective level information.

level

Character string. Choose between "Precursor.IDs", "Peptide.IDs", "Protein.IDs" or "ProteinGroup.IDs" for corresponding level. Default is "Precursor.IDs".

Author

Oliver Kardell

Details

For each submitted individual analysis a detailed barplot is generated with information about the number of achieved identifications per run.

Examples

# Load libraries
library(magrittr)
library(comprehenr)
library(tibble)

# Example data
data <- list(
 "A" = tibble::tibble(
   Analysis = c("A", "A", "A"),
   Run = c("R01", "R02", "R03"),
   Precursor.IDs = c(4800, 4799, 4809),
   Peptide.IDs = c(3194, 3200, 3185),
   Protein.IDs = c(538, 542, 538),
   ProteinGroup.IDs = c(487, 490, 486)
 ),
 "B" = tibble::tibble(
   Analysis = c("B", "B", "B"),
   Run = c("R01", "R02", "R03"),
   Precursor.IDs = c(4597, 4602, 4585),
   Peptide.IDs = c(3194, 3200, 3185),
   Protein.IDs = c(538, 542, 538),
   ProteinGroup.IDs = c(487, 490, 486)
 )
)

# Plot
plot_ID_barplot(
  input_list = data,
  level = "Precursor.IDs"
)