mpwR (version 0.1.5.1)

plot_ID_boxplot: Summary Boxplot - Identifications

Description

Plot summary of number of identifications in boxplot.

Usage

plot_ID_boxplot(
  input_list,
  level = c("Precursor.IDs", "Peptide.IDs", "Protein.IDs", "ProteinGroup.IDs")
)

Value

This function returns a boxplot.

Arguments

input_list

A list with data frames and respective level information.

level

Character string. Choose between "Precursor.IDs", "Peptide.IDs", "Protein.IDs" or "ProteinGroup.IDs" for corresponding level. Default is "Precursor.IDs".

Author

Oliver Kardell

Details

The analyses are summarized in a boxplot displaying information about the number of achieved identifications.

Examples

# Load libraries
library(magrittr)
library(dplyr)
library(tibble)

# Example data
data <- list(
 "A" = tibble::tibble(
   Analysis = c("A", "A", "A"),
   Run = c("R01", "R02", "R03"),
   Precursor.IDs = c(7000, 6100, 4809),
   Peptide.IDs = c(3194, 3200, 3185),
   Protein.IDs = c(538, 542, 538),
   ProteinGroup.IDs = c(487, 490, 486)
 ),
 "B" = tibble::tibble(
   Analysis = c("B", "B", "B"),
   Run = c("R01", "R02", "R03"),
   Precursor.IDs = c(3000, 3500, 4585),
   Peptide.IDs = c(3194, 3200, 3185),
   Protein.IDs = c(538, 542, 538),
   ProteinGroup.IDs = c(487, 490, 486)
 )
)

# Plot
plot_ID_boxplot(
  input_list = data,
  level = "Precursor.IDs"
)