mpwR (version 0.1.5.1)

plot_Upset: Upset Plot

Description

Plot intersections of analyses for different levels.

Usage

plot_Upset(
  input_list,
  label = c("Precursor.IDs", "Peptide.IDs", "Protein.IDs", "ProteinGroup.IDs"),
  nr_intersections = 10,
  highlight_overlap = FALSE
)

Value

This function returns a Upset plot.

Arguments

input_list

A list with data frames and respective level information.

label

Character string. Choose between "Precursor.IDs", "Peptide.IDs", "Protein.IDs" or "ProteinGroup.IDs" for corresponding level. Default is "Precursor.IDs".

nr_intersections

Numeric. Maximum number of intersections shown in plot. Default is 10.

highlight_overlap

Logical. If TRUE, overlapping intersections is highlighted in yellow. Default is FALSE. If TRUE, overlapping intersections need to be in plot!

Author

Oliver Kardell

Details

Identifications per level of each analysis are compared and possible intersections visualized.

Examples

# Load libraries
library(UpSetR)
library(tibble)

# Example data
data <- list(
 "A" = c("A", "B", "C", "D"),
 "B" = c("A", "B", "C", "F"),
 "C" = c("A", "B", "G", "E")
)

# Plot
plot_Upset(
  input_list = data,
  label = "Peptide.IDs"
)