mrbin (version 1.9.1)

setNoiseLevels: A function for setting and plotting noise levels.

Description

This function reads parameters from the global variable mrbin.env$mrbin$parameters and plots exemplary spectra and respective noise levels. Plots will be saved if saveFiles is set to "Yes".

Usage

setNoiseLevels(
  mrbinObject,
  plotOnly = FALSE,
  showSpectrumPreview = NULL,
  silent = FALSE,
  graphics = TRUE
)

Value

An invisible mrbin object

Arguments

mrbinObject

An mrbin object

plotOnly

Should only noise plots be generated (TRUE), or should noise levels be adjusted interactively (FALSE)

showSpectrumPreview

Should plots be shown? If not provided, this value will be taken from the mrbin object parameters

silent

If set to TRUE, plots will not be shown but might still be saved

graphics

Controls whether pop-up windows are shown for selections. Defaults to TRUE.

Examples

 results<-mrbin(silent=TRUE,
                   parameters=list(verbose=TRUE,dimension="1D",PQNScaling="No",
                   binwidth1D=0.04,signal_to_noise1D=1,PCA="No",binRegion=c(9.5,0.5,10,156),
                   saveFiles="No",referenceScaling="No",noiseRemoval="No",
                   fixNegatives="No",logTrafo="No",noiseThreshold=.05,tryParallel=TRUE,
                   NMRfolders=c(system.file("extdata/2/10/pdata/10",package="mrbin"),
                              system.file("extdata/3/10/pdata/10",package="mrbin"))
                   ))
 results<-setNoiseLevels(results,plotOnly=TRUE)