mrgmod-class: S4 class for mrgsolve model object.

Description

S4 class for mrgsolve model object.

Arguments

Slots

model: model name <character>

project

working directory; must be writeable with no spaces <character>

start

simulation start time <numeric>

end

simulation end time <numeric>

delta

simulation time interval <numeric>

add

additional simulation times <numeric-vector>

param

parameter_list

fixed

a parameter_list of fixed value parameters; these are not updatable from R

init

cmt_list

events

events object

digits

significant digits in simulated output; negative integer means ignore <numeric>

hmin

passed to dlsoda <numeric>

hmax

passed to dlsoda <numeric>

mxhnil

passed to dlsoda <numeric>

ixpr

passed to dlsoda <numeric>

atol

passed to dlsoda <numeric>

rtol

passed to dlsoda <numeric>

maxsteps

passed to dlsoda <numeric>

preclean

passed to R CMD SHLIB during compilation <logical>

verbose

print run information to screen <logical>

tscale

used to scale time in simulated output <numeric>

omega

matlist for simulating individual-level random effects

sigma

matlist for simulating residual error variates

args

<list> of arguments to be passed to mrgsim

advan

either 2, 4, or 13 <numeric>

trans

either 1, 2, 4, or 11

request

vector of compartments to request <character>

soloc

directory path for storing the model shared object <character>

code

a character vector of the model code

mindt

minimum time between simulation records <numeric>

envir

internal model environment <environment>

annot

model annotations <list>

plugin

model plugins <character>

Notes

Spaces in paths (project and soloc) are prohibited.