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msarc (version 1.2.0)

Draws diagrams (mis)representing the results of mass spec experiments

Description

Clusters Uniprot terms by GO category, then draws diagrams showing the results in hierarchical clusters, with lines for individual proteins, showing their score with the length of the line. The results are in general not publication-ready, but will rather require editing via Illustrator or some similar tool.

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Version

Install

install.packages('msarc')

Monthly Downloads

10

Version

1.2.0

License

Artistic-2.0

Maintainer

Gordon Brown

Last Published

April 9th, 2013

Functions in msarc (1.2.0)

msarc.loadTerms

Manipulate GO Term Lists
print.msarc

Display an msarc Object
msarc-package

msarc: Mass Spectrometry Experiment Plots
msarc.copyColors

Copy msarc Color Palette
sample_df

Sample Data for the msarc Package
sample_initial

Sample Objects for the msarc Package
msarc.plotHeatmap

Correlation Heat Maps for Mass Spec Experiments
msarc.plotSVG

Draw msarc Diagram
msarc.subtract

Subtract Control From Experiment
msarc.findGOterms

Map UniProt Ids to GO Terms
msarc

Create msarc Object From Data Frame
msarc.loadMS

Create msarc Object From Mass Spec Data