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msarc (version 1.3.1)

Draws diagrams (mis)representing the results of mass spec experiments

Description

Clusters Uniprot terms by GO category, then draws diagrams showing the results in hierarchical clusters, with lines for individual proteins, showing their score with the length of the line. The results are in general not publication-ready, but will rather require editing via Illustrator or some similar tool.

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Version

Install

install.packages('msarc')

Monthly Downloads

10

Version

1.3.1

License

Artistic-2.0

Maintainer

Gordon Brown

Last Published

July 30th, 2013

Functions in msarc (1.3.1)

msarc.loadMS

Create msarc Object From Mass Spec Data
msarc.copyColors

Copy msarc Color Palette
msarc

Create msarc Object From Data Frame
print.msarc

Display an msarc Object
msarc.loadTerms

Manipulate GO Term Lists
msarc.findGOterms

Map UniProt Ids to GO Terms
msarc.plotSVG

Draw msarc Diagram
sample_df

Sample Data for the msarc Package
msarc-package

msarc: Mass Spectrometry Experiment Plots
sample_initial

Sample Objects for the msarc Package
msarc.subtract

Subtract Control From Experiment
msarc.plotHeatmap

Correlation Heat Maps for Mass Spec Experiments