msarc.tagCloud

msarc

an RColorBrewer palette to use for word colours.  Default is
             <code>brewer.pal(10,"Spectral")</code>.

additional arguments passed to <code>wordcloud</code>.


Given an <code>msarc</code> object, draw the corresponding tag cloud.

hplot

The output of an affinity-purification mass spectrometry
experiment is typically a list of proteins that were observed
in the experiment, identified by UniProt identifiers
(http://www.uniprot.org/).  This package takes as input a list of
UniProt identifiers, and the associated Mascot scores from the
experiment (which indicate the likelihood that the protein has
been correctly identified), clusters them by gene ontology
category (http://geneontology.org/), then draws diagrams
showing the results in hierarchical clusters by category, with lines
for individual proteins representing the associated Mascot score.
The results are in general not publication-ready, but will rather
require editing via a graphics editor that can interpret SVG (scalable
vector graphics) format.  As an alternative representation, the
package will also generate tag clouds based on the Mascot scores.

msarc.tagCloud: Draw Tag Cloud

Description

Usage

Arguments

Value

Details

Examples