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msentropy (version 0.1.4)

Spectral Entropy for Mass Spectrometry Data

Description

Clean the MS/MS spectrum, calculate spectral entropy, unweighted entropy similarity, and entropy similarity for mass spectrometry data. The entropy similarity is a novel similarity measure for MS/MS spectra which outperform the widely used dot product similarity in compound identification. For more details, please refer to the paper: Yuanyue Li et al. (2021) "Spectral entropy outperforms MS/MS dot product similarity for small-molecule compound identification" .

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install.packages('msentropy')

Monthly Downloads

409

Version

0.1.4

License

Apache License (== 2.0)

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Maintainer

Yuanyue Li

Last Published

August 7th, 2023

Functions in msentropy (0.1.4)

calculate_unweighted_entropy_similarity

Unweighted entropy similarity between two spectra
calculate_entropy_similarity

Entropy similarity between two spectra
clean_spectrum

Clean a spectrum
msentropy_similarity

Calculate spectral entropy similarity between two spectra
calculate_spectral_entropy

Calculate spectral entropy of a spectrum