msig (version 1.0)

local_msig: Query gene set names from local data

Description

Query gene set names from local data

Usage

local_msig(
  geneset = NULL,
  description = NULL,
  collection = NULL,
  sub_collection = NULL,
  organism = NULL,
  contributor = NULL,
  contributor_org = NULL,
  author = NULL,
  chip = NULL,
  gene = NULL,
  geneset_fuzzy = NULL,
  collection_fuzzy = NULL,
  sub_collection_fuzzy = NULL,
  organism_fuzzy = NULL,
  contributor_fuzzy = NULL,
  contributor_org_fuzzy = NULL,
  author_fuzzy = NULL,
  chip_fuzzy = NULL,
  gene_fuzzy = NULL
)

Arguments

geneset

one sql format character for exact match

description

one sql format character for exact match

collection

one sql format character for exact match

sub_collection

one sql format character for exact match

organism

one sql format character for exact match

contributor

one sql format character for exact match

contributor_org

one sql format character for exact match

author

one sql format character for exact match

chip

one sql format character for exact match

gene

one sql format character for exact match

geneset_fuzzy

fuzzy match

collection_fuzzy

fuzzy match

sub_collection_fuzzy

fuzzy match

organism_fuzzy

fuzzy match

contributor_fuzzy

fuzzy match

contributor_org_fuzzy

fuzzy match

author_fuzzy

fuzzy match

chip_fuzzy

fuzzy match

gene_fuzzy

fuzzy match

Value

one dataframe with attribute of msig_local.

Examples

# NOT RUN {
x <- local_msig('IMMUNE_RESPONSE')
x <- local_msig('IMMUNE_RESPONSE|IMMUNE_SYSTEM_PROCESS')
# }