msigdbr-package

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 tools:::Rd_expr_doi("10.1073/pnas.0506580102"), Liberzon et al. 2015 tools:::Rd_expr_doi("10.1016/j.cels.2015.12.004"), Castanza et al. 2023 tools:::Rd_expr_doi("10.1038/s41592-023-02014-7")) as an R data frame. The package includes the human genes as listed in MSigDB as well as the corresponding symbols and IDs for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

internal

Provides the 'Molecular Signatures Database' (MSigDB) gene
sets typically used with the 'Gene Set Enrichment Analysis' (GSEA)
software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>,
Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al.
2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package
includes the human genes as listed in MSigDB as well as the
corresponding symbols and IDs for frequently studied model organisms
such as mouse, rat, pig, fly, and yeast.

Igor Dolgalev

msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

msigdbr-package function

Maintainer: Igor Dolgalev <a href="/link/igor.dolgalev%40nyumc.org?package=msigdbr&version=10.0.2" data-mini-rdoc="msigdbr::igor.dolgalev@nyumc.org">igor.dolgalev@nyumc.org</a> (<a href="https://orcid.org/0000-0003-4451-126X">ORCID</a>)

Author

msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format — msigdbr-package

Maintainer: Igor Dolgalev <a href='mailto:igor.dolgalev@nyumc.org'>igor.dolgalev@nyumc.org</a> (<a href='https://orcid.org/0000-0003-4451-126X'>ORCID</a>)

msigdbr-package: msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Description

Arguments

Author

See Also