msigdbr_check_data

Check that the 'msigdbdf' data package is installed.
If not, provide instructions for installation.
A dependency listed in DESCRIPTION Suggests is not guaranteed to be installed.

Provides the 'Molecular Signatures Database' (MSigDB) gene
sets typically used with the 'Gene Set Enrichment Analysis' (GSEA)
software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>,
Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al.
2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package
includes the human genes as listed in MSigDB as well as the
corresponding symbols and IDs for frequently studied model organisms
such as mouse, rat, pig, fly, and yeast.

Igor Dolgalev

msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

msigdbr_check_data function

<dl><dt>require_data</dt>
<dd>Stop execution if the data package is not installed.</dd></dl>

Arguments

Check that the data package is installed — msigdbr_check_data

<dl>

<dt>require_data</dt>
<dd>Stop execution if the data package is not installed.</dd>

</dl>

msigdbr_check_data: Check that the data package is installed

Description

Usage

Arguments