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msigdbr: MSigDB data frame

The msigdbr R package provides Molecular Signatures Database (MSigDB) gene sets:

  • in an R-friendly tidy format with one gene pair per row
  • for multiple frequently studied model organisms in addition to the original human genes
  • as gene symbols as well as NCBI Entrez and Ensembl IDs
  • without accessing external resources requiring an active internet connection

Check the documentation website for more information.

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Version

Install

install.packages('msigdbr')

Monthly Downloads

12,932

Version

25.1.0

License

MIT + file LICENSE

Maintainer

Igor Dolgalev

Last Published

July 3rd, 2025

Functions in msigdbr (25.1.0)

msigdbr_collections

List the collections available in the msigdbr package
msigdbr

Retrieve the gene sets data frame
msigdbr_species

List the species available in the msigdbr package
msigdbr-package

msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format