msigdbr_collections

List the collections available in the msigdbr package

Provides the 'Molecular Signatures Database' (MSigDB) gene
sets typically used with the 'Gene Set Enrichment Analysis' (GSEA)
software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>,
Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>, Castanza et al.
2023 <doi:10.1038/s41592-023-02014-7>) as an R data frame. The package
includes the human genes as listed in MSigDB as well as the
corresponding symbols and IDs for frequently studied model organisms
such as mouse, rat, pig, fly, and yeast.

Igor Dolgalev

msigdbr

MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

msigdbr_collections function

<dl><dt>db_species</dt>
<dd>Species abbreviation for the human or mouse databases (<code>"HS"</code> or <code>"MM"</code>).</dd></dl>

Arguments

List the collections available in the msigdbr package — msigdbr_collections

<dl>

<dt>db_species</dt>
<dd>Species abbreviation for the human or mouse databases (<code>"HS"</code> or <code>"MM"</code>).</dd>

</dl>

msigdbr_collections: List the collections available in the msigdbr package

Description

Usage

Value

Arguments