Coxian phase-type distribution with two phases
Developer documentation: censoring model object
The delta method
Bootstrap resampling for multi-state models
Matrix exponential
Bronchiolitis obliterans syndrome after lung transplants
Extract model coefficients
Aortic aneurysm progression data
Calculate crude initial values for transition intensities
Heart transplant monitoring data
FEV1 measurements from lung transplant recipients
Misclassification probability matrix
Developer documentation: hidden Markov model structure object
Developer documentation: misclassification model structure object
Developer documentation: model for covariates on misclassification probabilities
Criteria for comparing two multi-state models with nested state spaces
Calculate tables of hazard ratios for covariates on transition intensities
Expected first passage time
Hidden Markov model constructors
Multivariate hidden Markov models
Extract model log-likelihood
Convert data for `msm' to data for `survival', `mstate' or `flexsurv' analysis
Extract msm model parameter estimates in compact format
Fitted msm model objects
Measurement error distributions
Extract original data from msm
objects.
Multi-state Markov and hidden Markov models in continuous time
Developer documentation: internal msm parameters object
Likelihood ratio test
Calculate tables of odds ratios for covariates on
misclassification probabilities
Transition probability matrix for processes with
piecewise-constant intensities
Plot of observed and expected prevalences
Probability of each state being next
Transition probability matrix
Plots of multi-state models
Kaplan Meier estimates of incidence
Pearson-type goodness-of-fit test
Parameters of phase-type models in mixture form
Exponential distribution with piecewise-constant rate
Plot empirical and fitted survival curves
Passage probabilities
Developer documentation: model for covariates on transition intensities
Developer documentation: transition model structure object
Transition intensity matrix
Print a fitted msm model object
Estimated ratio of transition intensities
Print a fitted msm model object
Tables of observed and expected prevalences
Generic function to find quantiles of a distribution
Psoriatic arthritis data
Convert data stored in msm object to old format
Truncated Normal distribution
Simulate one individual trajectory from a continuous-time Markov model
Table of transitions
Explore the likelihood surface
Simulate from a Markov model fitted using msm
Mean sojourn times from a multi-state model
updatepars.msm
Simulate multiple trajectories from a multi-state Markov model with arbitrary observation times
Calculate the probabilities of underlying states and the most
likely path through them
Summarise a fitted multi-state model
Total length of stay, or expected number of visits
Score residuals
Transient and absorbing states